IL_8B2L_142

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_142 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.253

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8B2L|1|A3|A|2961
8B2L|1|A3|OMC|2962
8B2L|1|A3|C|2963
*
8B2L|1|A3|G|2975
8B2L|1|A3|G|2976
8B2L|1|A3|U|2977

Current chains

Chain A3

25S rRNA

Nearby chains

Chain i2

Transfer RNA; tRNA

Chain o3

uL2 (60S ribosomal protein L8)