IL_8B2L_149

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|G|3080, 8B2L|1|A3|U|3081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_149 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2294

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|U|3065
8B2L|1|A3|U|3066
*
8B2L|1|A3|A|3079
8B2L|1|A3|G|3080
8B2L|1|A3|U|3081
8B2L|1|A3|G|3082

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain Q3

eL31 (60S ribosomal protein L31)