IL_8B2L_155

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_155 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.2102

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

8B2L|1|A3|G|3217
8B2L|1|A3|G|3218
8B2L|1|A3|C|3219
*
8B2L|1|A3|G|3252
8B2L|1|A3|C|3253
8B2L|1|A3|C|3254

Current chains

Chain A3

25S rRNA

Nearby chains

Chain E3

60S ribosomal protein L14-1