IL_8B2L_171
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAG*CCGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_171 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.1613
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8B2L|1|B3|C|122
8B2L|1|B3|G|123
8B2L|1|B3|A|124
8B2L|1|B3|A|125
8B2L|1|B3|G|126
*
8B2L|1|B3|C|135
8B2L|1|B3|C|136
8B2L|1|B3|G|137
8B2L|1|B3|A|138
8B2L|1|B3|G|139
Current chains
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain k3
- 60S ribosomal protein L23a
Coloring options: