IL_8B2L_173

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAACGCA*UUAAGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_173 not in the Motif Atlas

Homologous match to IL_4WF9_113

Geometric discrepancy: 0.5805

The information below is about IL_4WF9_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01750.1

Basepair signature

cWW-cWW-L-cSW-L-cSW-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8B2L|1|C3|C|20
8B2L|1|C3|U|21
8B2L|1|C3|A|22
8B2L|1|C3|A|23
8B2L|1|C3|C|24
8B2L|1|C3|G|25
8B2L|1|C3|C|26
8B2L|1|C3|A|27
*
8B2L|1|C3|U|52
8B2L|1|C3|U|53
8B2L|1|C3|A|54
8B2L|1|C3|A|55
8B2L|1|C3|G|56
8B2L|1|C3|C|57
8B2L|1|C3|G|58

Current chains

Chain C3

5S rRNA

Nearby chains

Chain h3

60S ribosomal protein L5-like

Chain t3

uL5 (60S ribosomal protein L11)