IL_8B2L_178

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_178 not in the Motif Atlas

Homologous match to IL_4WSM_370

Geometric discrepancy: 0.2457

The information below is about IL_4WSM_370

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|W2|G|4
8B2L|1|W2|G|5
8B2L|1|W2|G|6
*
8B2L|1|W2|C|67
8B2L|1|W2|A|68
8B2L|1|W2|C|69

Current chains

Chain W2

tRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain Z3

60S ribosomal protein L44