IL_8B2L_193

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8B2L|1|h1|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_193 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.1646

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8B2L|1|h1|G|201
8B2L|1|h1|C|202
*
8B2L|1|h1|G|264
8B2L|1|h1|A|265
8B2L|1|h1|C|266

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8