IL_8B2L_202

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_202 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1132

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8B2L|1|h1|G|393
8B2L|1|h1|G|394
8B2L|1|h1|A|395
*
8B2L|1|h1|U|410
8B2L|1|h1|A|411
8B2L|1|h1|C|412

Current chains

Chain h1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8

Chain e3

60S ribosomal protein L23

Chain k1

40S ribosomal protein S6