IL_8B2L_205
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAG*CGAGG(A2M)UC
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|h1|G|542, 8B2L|1|h1|G|543, 8B2L|1|h1|U|545
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_205 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1709
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8B2L|1|h1|G|517
8B2L|1|h1|A|518
8B2L|1|h1|G|519
*
8B2L|1|h1|C|539
8B2L|1|h1|G|540
8B2L|1|h1|A|541
8B2L|1|h1|G|542
8B2L|1|h1|G|543
8B2L|1|h1|A2M|544
8B2L|1|h1|U|545
8B2L|1|h1|C|546
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain M1
- 40S ribosomal protein S30
- Chain b1
- 40S ribosomal protein S9-2-like
Coloring options: