IL_8B2L_217

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(PSU)U*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_217 not in the Motif Atlas

Homologous match to IL_4V88_424

Geometric discrepancy: 0.2599

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8B2L|1|h1|U|752
8B2L|1|h1|PSU|753
8B2L|1|h1|U|754
*
8B2L|1|h1|A|803
8B2L|1|h1|U|804
8B2L|1|h1|G|805

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain X1

40S ribosomal protein S11-like

Chain e1

40S ribosomal protein S15a-1