IL_8B2L_220

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_220 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1893

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8B2L|1|h1|U|828
8B2L|1|h1|C|829
8B2L|1|h1|C|830
*
8B2L|1|h1|G|848
8B2L|1|h1|G|849
8B2L|1|h1|A|850

Current chains

Chain h1

18S rRNA

Nearby chains

Chain X1

40S ribosomal protein S11-like