IL_8B2L_222

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAC*G(PSU)UUU

Length

9 nucleotides

Bulged bases

8B2L|1|h1|U|962

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_222 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.3056

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8B2L|1|h1|G|870
8B2L|1|h1|G|871
8B2L|1|h1|A|872
8B2L|1|h1|C|873
*
8B2L|1|h1|G|960
8B2L|1|h1|PSU|961
8B2L|1|h1|U|962
8B2L|1|h1|U|963
8B2L|1|h1|U|964

Current chains

Chain h1

18S rRNA

Nearby chains

Chain K1

40S ribosomal protein S27

Chain W1

30S ribosomal protein S15, chloroplastic