IL_8B2L_227
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGCUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_227 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.0778
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|G|988
8B2L|1|h1|G|989
8B2L|1|h1|G|990
8B2L|1|h1|C|991
8B2L|1|h1|U|992
8B2L|1|h1|C|993
*
8B2L|1|h1|G|1017
8B2L|1|h1|U|1018
8B2L|1|h1|C|1019
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain J1
- 40S ribosomal protein S26
- Chain S1
- 40S ribosomal protein S14-2
- Chain a3
- 60S ribosomal protein L37a
- Chain o3
- uL2 (60S ribosomal protein L8)
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