IL_8B2L_229

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*G(OMU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_229 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1007

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8B2L|1|h1|G|997
8B2L|1|h1|A|998
8B2L|1|h1|C|999
*
8B2L|1|h1|G|1011
8B2L|1|h1|OMU|1012
8B2L|1|h1|C|1013

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain J1

40S ribosomal protein S26

Chain S1

40S ribosomal protein S14-2

Chain o3

uL2 (60S ribosomal protein L8)