IL_8B2L_233

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

8B2L|1|h1|G|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_233 not in the Motif Atlas

Geometric match to IL_5TBW_037

Geometric discrepancy: 0.3744

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8B2L|1|h1|U|1058
8B2L|1|h1|G|1059
8B2L|1|h1|C|1060
*
8B2L|1|h1|G|1066
8B2L|1|h1|G|1067

Current chains

Chain h1

18S rRNA

Nearby chains

Chain F1

40S ribosomal protein S3a

Chain K1

40S ribosomal protein S27