IL_8B2L_236

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

8B2L|1|h1|G|1153

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_236 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2171

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8B2L|1|h1|C|1151
8B2L|1|h1|G|1152
8B2L|1|h1|G|1153
8B2L|1|h1|A|1154
*
8B2L|1|h1|U|1633
8B2L|1|h1|PSU|1634
8B2L|1|h1|G|1635

Current chains

Chain h1

18S rRNA

Nearby chains

Chain B1

mRNA

Chain J1

40S ribosomal protein S26

Chain c1

40S ribosomal protein S2-3-like