IL_8B2L_237

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8B2L|1|h1|C|1161, 8B2L|1|h1|C|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_237 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.1558

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8B2L|1|h1|A|1160
8B2L|1|h1|C|1161
8B2L|1|h1|C|1162
8B2L|1|h1|A|1163
*
8B2L|1|h1|U|1623
8B2L|1|h1|C|1624
8B2L|1|h1|C|1625
8B2L|1|h1|C|1626
8B2L|1|h1|U|1627

Current chains

Chain h1

18S rRNA

Nearby chains

Chain L1

40S ribosomal protein S28

Chain W2

Transfer RNA; tRNA

Chain d1

40S ribosomal protein S5-like

Chain f1

40S ribosomal protein S16