IL_8B2L_239

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_239 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.0886

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8B2L|1|h1|G|1181
8B2L|1|h1|G|1182
*
8B2L|1|h1|C|1464
8B2L|1|h1|A|1465
8B2L|1|h1|C|1466

Current chains

Chain h1

18S rRNA

Nearby chains

Chain U1

40S ribosomal protein S18

Chain W2

Transfer RNA; tRNA

Chain Y1

40S ribosomal protein S15-like