IL_8B2L_242

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_242 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.161

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8B2L|1|h1|G|1273
8B2L|1|h1|OMG|1274
8B2L|1|h1|U|1275
*
8B2L|1|h1|G|1443
8B2L|1|h1|C|1444
8B2L|1|h1|C|1445

Current chains

Chain h1

18S rRNA

Nearby chains

Chain a1

40S ribosomal protein S3-2-like

Chain i2

Transfer RNA; tRNA