IL_8B2L_248
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_248 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.1045
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8B2L|1|h1|C|1342
8B2L|1|h1|U|1343
8B2L|1|h1|G|1344
8B2L|1|h1|C|1345
*
8B2L|1|h1|G|1388
8B2L|1|h1|A|1389
8B2L|1|h1|G|1390
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain D1
- 40S ribosomal protein S17-like
- Chain Q1
- guanine nucleotide-binding protein subunit beta-like protein
- Chain R1
- 40S ribosomal protein S20-2
- Chain f1
- 40S ribosomal protein S16
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