IL_8B2L_251
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAC*GCGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_251 not in the Motif Atlas
- Geometric match to IL_5J7L_053
- Geometric discrepancy: 0.3219
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|C|1394
8B2L|1|h1|U|1395
8B2L|1|h1|A|1396
8B2L|1|h1|C|1397
*
8B2L|1|h1|G|1411
8B2L|1|h1|C|1412
8B2L|1|h1|G|1413
8B2L|1|h1|G|1414
8B2L|1|h1|A|1415
8B2L|1|h1|A|1416
8B2L|1|h1|G|1417
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain D1
- 40S ribosomal protein S17-like
- Chain L1
- 40S ribosomal protein S28
- Chain Q1
- guanine nucleotide-binding protein subunit beta-like protein
- Chain d1
- 40S ribosomal protein S5-like
- Chain f1
- 40S ribosomal protein S16
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