IL_8B2L_255

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_255 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1123

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8B2L|1|h1|G|1546
8B2L|1|h1|G|1547
8B2L|1|h1|G|1548
8B2L|1|h1|A|1549
8B2L|1|h1|U|1550
8B2L|1|h1|A|1551
*
8B2L|1|h1|U|1572
8B2L|1|h1|U|1573
8B2L|1|h1|C|1574
8B2L|1|h1|A|1575
8B2L|1|h1|A|1576
8B2L|1|h1|C|1577

Current chains

Chain h1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein S19-3

Chain U1

40S ribosomal protein S18

Chain d1

40S ribosomal protein S5-like