IL_8B2L_257
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_257 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.0728
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.3
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|h1|G|1644
8B2L|1|h1|OMC|1645
8B2L|1|h1|C|1646
8B2L|1|h1|C|1647
*
8B2L|1|h1|G|1768
8B2L|1|h1|U|1769
8B2L|1|h1|A|1770
8B2L|1|h1|6MZ|1771
8B2L|1|h1|C|1772
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- mRNA
- Chain W2
- Transfer RNA; tRNA
- Chain p3
- 60S ribosomal protein L41
Coloring options: