IL_8B2L_260

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAC*GA(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_260 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.1849

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8B2L|1|h1|C|1655
8B2L|1|h1|U|1656
8B2L|1|h1|A|1657
8B2L|1|h1|C|1658
*
8B2L|1|h1|G|1756
8B2L|1|h1|A|1757
8B2L|1|h1|A2M|1758
8B2L|1|h1|G|1759

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain T1

40S ribosomal protein S23

Chain p3

60S ribosomal protein L41