IL_8B2L_270
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AC*G(PSU)(OMU)
- Length
- 5 nucleotides
- Bulged bases
- 8B2L|1|A3|PSU|786
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_270 not in the Motif Atlas
- Homologous match to IL_8C3A_027
- Geometric discrepancy: 0.4242
- The information below is about IL_8C3A_027
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8B2L|1|A3|A|765
8B2L|1|A3|C|766
*
8B2L|1|A3|G|785
8B2L|1|A3|PSU|786
8B2L|1|A3|OMU|787
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain O3
- 60S ribosomal protein L29
- Chain f3
- uL15 (60S ribosomal protein L27a)
Coloring options: