IL_8B2L_274
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGGUAA*(PSU)AAA(OMU)AG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_274 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.1922
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|C|1003
8B2L|1|A3|G|1004
8B2L|1|A3|G|1005
8B2L|1|A3|G|1006
8B2L|1|A3|U|1007
8B2L|1|A3|A|1008
8B2L|1|A3|A|1009
*
8B2L|1|A3|PSU|1064
8B2L|1|A3|A|1065
8B2L|1|A3|A|1066
8B2L|1|A3|A|1067
8B2L|1|A3|OMU|1068
8B2L|1|A3|A|1069
8B2L|1|A3|G|1070
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain I3
- 60S ribosomal protein L18a
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h3
- 60S ribosomal protein L5-like
- Chain q3
- 60S ribosomal protein L7-4-like
Coloring options: