IL_8B2L_275

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AA*UU(PSU)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_275 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.3889

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8B2L|1|A3|A|1009
8B2L|1|A3|A|1010
*
8B2L|1|A3|U|1062
8B2L|1|A3|U|1063
8B2L|1|A3|PSU|1064

Current chains

Chain A3

25S rRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain J3

60S ribosomal protein L21-1-like

Chain g3

uL16 (60S ribosomal protein L10)

Chain h3

60S ribosomal protein L5-like