IL_8B2L_283

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)CAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_283 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1571

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|A3|PSU|2214
8B2L|1|A3|C|2215
8B2L|1|A3|A|2216
8B2L|1|A3|A|2217
8B2L|1|A3|A|2218
8B2L|1|A3|G|2219
8B2L|1|A3|U|2220
*
8B2L|1|A3|A|2231
8B2L|1|A3|A|2232
8B2L|1|A3|C|2233
8B2L|1|A3|C|2234
8B2L|1|A3|A|2235
8B2L|1|A3|A|2236
8B2L|1|A3|G|2237

Current chains

Chain A3

25S rRNA

Nearby chains

Chain U3

eL36 (60S ribosomal protein L36)

Chain W2

Transfer RNA; tRNA

Chain o3

uL2 (60S ribosomal protein L8)