IL_8B2L_286

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMG)(OMU)U*AC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|OMU|2413

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_286 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0878

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8B2L|1|A3|OMG|2412
8B2L|1|A3|OMU|2413
8B2L|1|A3|U|2414
*
8B2L|1|A3|A|2814
8B2L|1|A3|C|2815

Current chains

Chain A3

25S rRNA

Nearby chains

Chain f3

uL15 (60S ribosomal protein L27a)

Chain s3

uL4 (60S ribosomal protein L4)