IL_8B2L_287

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUC*GG(UY1)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_287 not in the Motif Atlas

Geometric match to IL_7Y2B_002

Geometric discrepancy: 0.1966

The information below is about IL_7Y2B_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|A|2631
8B2L|1|A3|U|2632
8B2L|1|A3|C|2633
*
8B2L|1|A3|G|2651
8B2L|1|A3|G|2652
8B2L|1|A3|UY1|2653

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain g3

uL16 (60S ribosomal protein L10)