IL_8B2L_290

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)UG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_290 not in the Motif Atlas

Homologous match to IL_8P9A_331

Geometric discrepancy: 0.3459

The information below is about IL_8P9A_331

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

8B2L|1|A3|PSU|2829
8B2L|1|A3|U|2830
8B2L|1|A3|G|2831
*
8B2L|1|A3|U|2865
8B2L|1|A3|G|2866

Current chains

Chain A3

25S rRNA

Nearby chains

Chain g3

uL16 (60S ribosomal protein L10)