IL_8B2L_292

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCA*(UY1)A

Length

5 nucleotides

Bulged bases

8B2L|1|h1|C|25

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_292 not in the Motif Atlas

Homologous match to IL_8P9A_373

Geometric discrepancy: 0.3282

The information below is about IL_8P9A_373

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8B2L|1|h1|U|24
8B2L|1|h1|C|25
8B2L|1|h1|A|26
*
8B2L|1|h1|UY1|603
8B2L|1|h1|A|604

Current chains

Chain h1

18S rRNA

Nearby chains

Chain T1

40S ribosomal protein S23

Chain b1

40S ribosomal protein S9-2-like