IL_8B2L_296

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG(PSU)U(OMU)*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_296 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2439

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.2

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|U|118
8B2L|1|h1|U|119
8B2L|1|h1|G|120
8B2L|1|h1|PSU|121
8B2L|1|h1|U|122
8B2L|1|h1|OMU|123
*
8B2L|1|h1|A|299
8B2L|1|h1|U|300
8B2L|1|h1|U|301
8B2L|1|h1|C|302
8B2L|1|h1|A|303

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8