IL_8B2L_299

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAA(PSU)*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_299 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.3241

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

6

Unit IDs

8B2L|1|h1|C|447
8B2L|1|h1|C|448
8B2L|1|h1|A|449
8B2L|1|h1|A|450
8B2L|1|h1|PSU|451
*
8B2L|1|h1|A|464
8B2L|1|h1|G|465

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S24

Chain b1

40S ribosomal protein S9-2-like