IL_8B2L_300

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)C*GGA

Length

5 nucleotides

Bulged bases

8B2L|1|h1|G|463

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_300 not in the Motif Atlas

Homologous match to IL_8P9A_398

Geometric discrepancy: 0.3498

The information below is about IL_8P9A_398

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

8B2L|1|h1|PSU|451
8B2L|1|h1|C|452
*
8B2L|1|h1|G|462
8B2L|1|h1|G|463
8B2L|1|h1|A|464

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S24

Chain b1

40S ribosomal protein S9-2-like