IL_8B2L_303
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAGAAA(PSU)(PSU)*ACAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_303 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.4526
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|G|755
8B2L|1|h1|A|756
8B2L|1|h1|A|757
8B2L|1|h1|G|758
8B2L|1|h1|A|759
8B2L|1|h1|A|760
8B2L|1|h1|A|761
8B2L|1|h1|PSU|762
8B2L|1|h1|PSU|763
*
8B2L|1|h1|A|795
8B2L|1|h1|C|796
8B2L|1|h1|A|797
8B2L|1|h1|U|798
8B2L|1|h1|U|799
8B2L|1|h1|A2M|800
8B2L|1|h1|G|801
8B2L|1|h1|C|802
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain X1
- 40S ribosomal protein S11-like
- Chain b1
- 40S ribosomal protein S9-2-like
- Chain e1
- 40S ribosomal protein S15a-1
Coloring options: