IL_8B2L_306

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

8B2L|1|h1|G|1153

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_306 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.4058

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

8B2L|1|h1|G|1152
8B2L|1|h1|G|1153
8B2L|1|h1|A|1154
*
8B2L|1|h1|U|1633
8B2L|1|h1|PSU|1634

Current chains

Chain h1

18S rRNA

Nearby chains

Chain B1

mRNA

Chain J1

40S ribosomal protein S26