IL_8B2L_312
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)GG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_312 not in the Motif Atlas
- Homologous match to IL_8P9A_442
- Geometric discrepancy: 0.3229
- The information below is about IL_8P9A_442
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 61
Unit IDs
8B2L|1|h1|PSU|1293
8B2L|1|h1|G|1294
8B2L|1|h1|G|1295
*
8B2L|1|h1|C|1326
8B2L|1|h1|G|1327
8B2L|1|h1|A|1328
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain D1
- 40S ribosomal protein S17-like
- Chain Z1
- 40S ribosomal protein SA
- Chain a1
- 40S ribosomal protein S3-2-like
- Chain c1
- 40S ribosomal protein S2-3-like
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