IL_8B5L_029

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8B5L|1|5|U|515

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_029 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.1468

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8B5L|1|5|U|514
8B5L|1|5|U|515
8B5L|1|5|U|516
8B5L|1|5|C|517
*
8B5L|1|5|G|640
8B5L|1|5|G|641

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13