IL_8B5L_030

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8B5L|1|5|G|1231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_030 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.2386

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8B5L|1|5|C|703
8B5L|1|5|G|704
*
8B5L|1|5|C|1230
8B5L|1|5|G|1231
8B5L|1|5|G|1232

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain f

60S ribosomal protein L35a