IL_8B5L_034

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCG*CCCG

Length

7 nucleotides

Bulged bases

8B5L|1|5|C|732, 8B5L|1|5|C|823, 8B5L|1|5|C|824

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_034 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2704

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8B5L|1|5|C|731
8B5L|1|5|C|732
8B5L|1|5|G|734
*
8B5L|1|5|C|822
8B5L|1|5|C|823
8B5L|1|5|C|824
8B5L|1|5|G|825

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14