IL_8B5L_047

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_047 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2129

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8B5L|1|5|C|1386
8B5L|1|5|G|1387
8B5L|1|5|A|1388
8B5L|1|5|G|1389
*
8B5L|1|5|C|1405
8B5L|1|5|G|1406
8B5L|1|5|A|1407
8B5L|1|5|G|1408

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L18