IL_8B5L_050
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CC(OMG)A(A2M)AG*CUAGUAGCUG
- Length
- 17 nucleotides
- Bulged bases
- 8B5L|1|5|A|1605, 8B5L|1|5|G|1609
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|1475
8B5L|1|5|C|1476
8B5L|1|5|OMG|1477
8B5L|1|5|A|1478
8B5L|1|5|A2M|1479
8B5L|1|5|A|1480
8B5L|1|5|G|1481
*
8B5L|1|5|C|1603
8B5L|1|5|U|1604
8B5L|1|5|A|1605
8B5L|1|5|G|1606
8B5L|1|5|U|1607
8B5L|1|5|A|1608
8B5L|1|5|G|1609
8B5L|1|5|C|1610
8B5L|1|5|U|1611
8B5L|1|5|G|1612
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- Ribosomal protein L37
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