IL_8B5L_052

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_052 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.084

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8B5L|1|5|C|1506
8B5L|1|5|G|1507
8B5L|1|5|A|1508
8B5L|1|5|A|1509
8B5L|1|5|G|1510
*
8B5L|1|5|U|1527
8B5L|1|5|G|1528
8B5L|1|5|G|1529
8B5L|1|5|A|1530
8B5L|1|5|G|1531

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain p

60S ribosomal protein L37a