IL_8B5L_059

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8B5L|1|5|G|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_059 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0953

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8B5L|1|5|A|1662
8B5L|1|5|G|1663
8B5L|1|5|U|1664
*
8B5L|1|5|A|1777
8B5L|1|5|U|1778

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29