IL_8B5L_078

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8B5L|1|5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_078 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5113

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8B5L|1|5|G|1912
8B5L|1|5|U|1913
8B5L|1|5|G|1914
8B5L|1|5|G|1915
8B5L|1|5|C|1916
*
8B5L|1|5|G|1928
8B5L|1|5|A|1929
8B5L|1|5|A|1930
8B5L|1|5|U|1931
8B5L|1|5|C|1932

Current chains

Chain 5

28S rRNA

Nearby chains