IL_8B5L_083
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8B5L|1|5|U|2148
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_083 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1216
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8B5L|1|5|C|2145
8B5L|1|5|C|2146
8B5L|1|5|U|2147
8B5L|1|5|U|2148
8B5L|1|5|G|2149
8B5L|1|5|A|2150
8B5L|1|5|A|2151
8B5L|1|5|G|2152
*
8B5L|1|5|U|2172
8B5L|1|5|G|2173
8B5L|1|5|G|2174
8B5L|1|5|A|2175
8B5L|1|5|G|2176
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
- Chain Y
- Ribosomal protein L26
- Chain e
- Ribosomal protein L32
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