IL_8B5L_086
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 8B5L|1|5|A|2271
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_086 not in the Motif Atlas
- Geometric match to IL_7A0S_047
- Geometric discrepancy: 0.2157
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8B5L|1|5|U|2258
8B5L|1|5|G|2259
8B5L|1|5|A|2260
8B5L|1|5|A|2261
8B5L|1|5|C|2262
*
8B5L|1|5|G|2270
8B5L|1|5|A|2271
8B5L|1|5|A|2272
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17
- Chain R
- Ribosomal protein L19
- Chain l
- 60S ribosomal protein L39-like
- Chain s
- Protein transport protein Sec61 subunit alpha isoform 1
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