IL_8B5L_089
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- G(7MG)G*CCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B5L_089 not in the Motif Atlas
- Geometric match to IL_5VCI_002
- Geometric discrepancy: 0.1293
- The information below is about IL_5VCI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8B5L|1|5|G|2364
8B5L|1|5|7MG|2365
8B5L|1|5|G|2366
*
8B5L|1|5|C|2375
8B5L|1|5|C|2376
8B5L|1|5|C|2377
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
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