IL_8B5L_090

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B5L_090 not in the Motif Atlas

Homologous match to IL_8CRE_069

Geometric discrepancy: 0.5976

The information below is about IL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8B5L|1|5|G|2385
8B5L|1|5|A|2386
8B5L|1|5|G|2387
8B5L|1|5|U|2388
8B5L|1|5|G|2389
8B5L|1|5|G|2390
*
8B5L|1|5|C|2615
8B5L|1|5|OMG|2616
8B5L|1|5|C|2617

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38

Chain t

Signal sequence receptor subunit 3